This level begins with an ambush by Tabuu. Tabuu anticipated that Bowser Jr. would find the fighters trophies and simply waited for Bowser Jr. for to do so. Sending an off wave into our home dimension, all characters in your party are turned into trophies. Dr. Eggman and Shake King then pilot their respective ships into the skies of Earth and send their respective forces to capture the trophies. Only Miiyamoto(the Mii used in Max's adventure mode) is left. He knows what will happen if Tabuu succeeds, but he is powerless to stop him until he sees the Smash Ball Bowser Jr. had. Jr. had dropped it when he was turned into a trophy. Miiyamoto picks it up and it sinks into his hand, imbuing him with all the moves the Mii has, but no special moves. The cutscene then shows him piloting a helicopter towards the Shake King's ship.
Shake King's ship
The next cutscene shows you crash landing your helicopter on Shake King's ENORMOUS ship. You must fight your way through every inch of the ship locating the trophified characters. The characters are found in this order. Because some of the characters must be picked up during your original quest, they may not appear in this stage if you didn't pick them up. Those characters will be underlined.
King K. Rool
Wolf O' Donnell
After you find Ike, you see the trophified Male Pokemon Trainer. Before you can revive him, the Shake King ambushes you. In this boss battle, instead of deciding which characters you'll use, you play as Miiyamoto and you must program his special moveset. After the battle, you revive the Male Pokemon Trainer, who escorts you to Eggman's ship via Charizard.